If anyone has recently bought an injected R1 you will probably need to buy an aftermarket box to alter the fuel and ignition mappings to suit your new
install.
I have a Yoshimura EMS system for sale that does this - basically does the same as POwer Commander III (and a bit more)
Save some pennies see this For Sale post for more info
http://www.locostbuilders.co.uk/forumdisplay.php?fid=34
Cheers
Paul